Table 1 Meta-analytic results for the 30 most predictive SNPs in the Skafidas classifier

SNP	Chr	BP	A1	A2	ln(OR)	P-value
rs260808	11	103 909 166	A	C	−0.024	0.510
rs769052	5	138 944 433	T	C	−0.042	0.422
rs876619	16	56 283 534	A	C	0.044	0.398
rs905646	11	88 353 802	A	G	0.062	0.167
rs968122	12	70 791 615	T	C	0.001	0.974
rs984371	11	55 577 698	T	C	0.018	0.594
rs1243679	14	21 093 733	A	G	0.027	0.710
rs1818106	11	103 913 376	A	C	0.009	0.736
rs2239118	12	2 660 753	T	C	0.054	0.097
rs2240228	19	15 852 872	A	G	0.083	0.007
rs2300497	14	90 865 283	T	C	0.034	0.408
rs2384061	2	25 135 620	A	G	0.052	0.058
rs3773540	3	55 096 928	A	G	−0.085	0.273
rs4128941	17	63 531 331	A	G	−0.123	0.085
rs4308342	4	71 884 205	T	G	−0.107	0.142
rs4648135	4	103 536 670	A	G	0.008	0.894
rs6483362	11	88 412 451	A	G	−0.0335	0.513
rs7313997	12	71 265 958	A	C	0.035	0.450
rs7562445	2	213 192 048	T	G	0.042	0.279
rs7842798	8	131 890 170	A	G	0.033	0.241
rs8053370	16	56 262 906	T	C	−0.042	0.415
rs9288685	2	233 987 114	T	C	−0.007	0.804
rs10193128	2	233 987 722	T	C	−0.015	0.581
rs10409541	19	13 433 127	T	C	0.087	0.048
rs11020772	12	70 792 582	T	G	0.001	0.966
rs11145506	9	80 264 584	T	C	−0.117	0.282
rs12317962	12	70 792 582	T	G	0.001	0.966
rs12582971	12	18 459 387	T	C	−0.001	0.981
rs17629494	10	53 560 898	T	C	−0.060	0.217
rs17643974	10	126 792 798	T	C	0.002	0.964

Abbreviations: BP, base pair in HG19; Chr, chromosome; OR, odds ratio; SNP, single-nucleotide polymorphism.
The SNP name, chromosome, base pair, reference allele, alternate allele, natural log of the odds ratio and P-value are presented from the meta-analysis of autism spectrum disorders from the Psychiatric Genomics Consortium. This meta-analytic strategy reflects the weighted combination of the contributing cohorts reflective of power to detect association. None of the SNPs meet a multiple testing significance threshold, let alone the genome-wide association threshold of 5 × 10⁻⁸.

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