Figure 3
‘Conditional FDR Manhattan plot’. Conditional FDR Manhattan plot of conditional –log10 (FDR) values for schizophrenia (SCZ) alone (gray) and SCZ conditioned on multiple sclerosis (MS; SCZ|MS, red). SNPs with conditional –log10 FDR>1.3 (that is, FDR<0.05) are shown with large points. A black line around the large points indicates the most significant SNP in each LD block. This SNP is annotated with the closest gene. Genes are listed in increasing order in terms of SNPs genomic position within each chromosome from left to right and novel ones are marked by stars (*). The figure shows the localization of the 21 independent loci on a total of 13 chromosomes.
