Table 1 Conditional FDR<0.05, non MHC SNPs associated with schizophrenia given multiple sclerosis
Locus # | SNP | Location | Gene | SCZ P | FDR SCZ | FDR SCZ|MS |
|---|---|---|---|---|---|---|
1 | rs1625579 | 1p21.3 | AK094607 a, b (MIR137HG) | 5.52E-06 | 4.92E-02 | 3.69E-02 |
2 | rs17180327 | 2q31.3 | CWC22 b, c | 6.37E-06 | 5.19E-02 | 3.95E-03 |
3 | rs7646226 | 3p21-p14 | PTPRG b, c | 5.51E-06 | 4.92E-02 | 2.43E-02 |
4 | rs9462875 | 6p21.1 | CUL9 b, c | 1.20E-05 | 6.59E-02 | 4.14E-02 |
5 | rs10257990 | 7p22 | MAD1L1 a, b | 5.53E-06 | 4.92E-02 | 1.63E-02 |
6 | rs10503253 | 8p23.2 | CSMD1 a, b | 3.96E-06 | 4.70E-02 | 4.04E-02 |
rs10503256 | 8p23.2 | CSMD1 a, b | 2.27E-06 | 4.32E-02 | 1.29E-02 | |
7 | rs6990941 | 8q21.3 | MMP16 a, b | 2.48E-06 | 4.32E-02 | 1.48E-02 |
8 | rs396861 | 9p24 | AK3 | 6.89E-06 | 5.19E-02 | 4.53E-02 |
9 | rs4532960 | 10q24.32 | AS3MT b | 2.65E-06 | 4.32E-02 | 1.29E-02 |
10 | rs12411886 | 10q24.32 | CNNM2 a, b | 1.79E-06 | 4.10E-02 | 1.86E-02 |
11 | rs11191732 | 10q25.1 | NEURL b | 2.55E-06 | 4.32E-02 | 2.69E-02 |
12 | rs1025641 | 10q26.2 | C10orf90 | 7.51E-06 | 5.54E-02 | 4.87E-02 |
13 | rs2852034 | 11q22.1 | CNTN5 | 1.12E-05 | 6.00E-02 | 2.90E-02 |
14 | rs540723 | 11q23.3 | STT3A b | 1.82E-06 | 4.10E-02 | 2.56E-02 |
15 | rs7972947 | 12p13.3 | CACNA1C a, b | 7.12E-06 | 5.54E-02 | 4.87E-02 |
16 | rs2007044 | 12p13.3 | CACNA1C a, b | 2.74E-05 | 9.43E-02 | 1.75E-02 |
17 | rs12436216 | 14q13.2 | KIAA0391 b | 7.40E-06 | 5.54E-02 | 4.87E-02 |
18 | rs1869901 | 15q15 | PLCB2 b | 3.66E-06 | 4.70E-02 | 4.04E-02 |
19 | rs4887348 | 15q25 | NTRK3 | 4.69E-05 | 1.39E-01 | 3.05E-02 |
20 | rs4309482 | 18 | AK093940 | 9.66E-06 | 6.00E-02 | 1.34E-02 |
