Table 1 List of all 237 SNPs for ASD classifier in the CEU Cohort,2 organised from highest to lowest median weightings
SNP | Weight lower | Weight median | Weight upper | Gene no. | Gene symbol |
|---|---|---|---|---|---|
rs968122 | 1.5465 | 1.5555 | 1.5645 | 27 345 | KCNMB4 |
rs876619 | 0.9476 | 1.2092 | 1.4708 | 2775 | GNAO1 |
rs11020772 | 0.8553 | 0.8641 | 0.8729 | 2915 | GRM5 |
rs9288685 | 0.5856 | 0.5998 | 0.614 | 3635 | INPP5D |
rs10193128 | 0.5836 | 0.5946 | 0.6056 | 3635 | INPP5D |
rs7842798 | 0.5298 | 0.5386 | 0.5474 | 114 | ADCY8 |
rs3773540 | 0.5125 | 0.5208 | 0.5291 | 55 799 | CACNA2D3 |
rs1818106 | 0.5002 | 0.5161 | 0.532 | 80 310 | PDGFD |
rs2384061 | 0.4195 | 0.4306 | 0.4417 | 109 | ADCY3 |
rs12582971 | 0.3983 | 0.4295 | 0.4607 | 5288 | PIK3C2G |
rs10409541 | 0.4067 | 0.4189 | 0.4311 | 773 | CACNA1A |
rs2300497 | 0.3782 | 0.3889 | 0.3996 | 801 | CALM1 |
rs7562445 | 0.3741 | 0.3843 | 0.3945 | 2066 | ERBB4 |
rs7313997 | 0.3382 | 0.3567 | 0.3752 | 5801 | PTPRR |
rs2239118 | 0.3348 | 0.3552 | 0.3756 | 775 | CACNA1C |
rs4688054 | 0.1801 | 0.3476 | 0.515 | 2932 | GSK3B |
rs10823195 | 0.2597 | 0.3445 | 0.4294 | 1763 | DNA2 |
rs9798267 | 0.2759 | 0.3388 | 0.4017 | 84 083 | ZRANB3 |
rs1075354 | 0.4236 | 0.3177 | 0.6402 | 55 799 | CACNA2D3 |
rs1942052 | 0.2641 | 0.3088 | 0.3535 | 130 013 | ACMSD |
rs4696443 | 0.2525 | 0.3047 | 0.3569 | 23 321 | TRIM2 |
rs243196 | 0.2402 | 0.2976 | 0.3549 | 1112 | FOXN3 |
rs16929470 | 0.1854 | 0.2712 | 0.3571 | 775 | CACNA1C |
rs7580690 | 0.1647 | 0.2248 | 0.285 | 83 439 | TCF7L1 |
rs7145618 | 0.1515 | 0.2238 | 0.296 | 5528 | PPP2R5C |
rs3770132 | 0.1514 | 0.2093 | 0.2673 | 3676 | ITGA4 |
rs3790095 | 0.1215 | 0.2017 | 0.2819 | 2775 | GNAO1 |
rs1013459 | 0.1417 | 0.1969 | 0.2522 | 2774 | GNAL |
rs11001056 | 0.1519 | 0.1891 | 0.2263 | 5592 | PRKG1 |
rs10952662 | 0.148 | 0.1868 | 0.2257 | 26 047 | CNTNAP2 |
rs7756516 | 0.152 | 0.1853 | 0.2186 | 3120 | HLA-DQB2 |
rs8054767 | 0.1322 | 0.1803 | 0.2284 | 5579 | PRKCB |
rs2239028 | 0.1121 | 0.1763 | 0.2405 | 775 | CACNA1C |
rs3935743 | 0.0969 | 0.1737 | 0.2505 | 5336 | PLCG2 |
rs4324526 | 0.1239 | 0.16 | 0.196 | 53 343 | NUDT9 |
rs11736177 | 0.1047 | 0.1525 | 0.2004 | 5593 | PRKG2 |
rs3020827 | 0.1094 | 0.144 | 0.1786 | 3815 | KIT |
rs976266 | 0.0975 | 0.1373 | 0.1771 | 114 | ADCY8 |
rs884080 | 0.0999 | 0.136 | 0.172 | 5590 | PRKCZ |
rs7903424 | 0.0927 | 0.1319 | 0.1711 | 6934 | TCF7L2 |
rs4465567 | 0.0837 | 0.1224 | 0.1611 | 10 125 | RASGRP1 |
rs2270838 | 0.059 | 0.1221 | 0.1852 | 11 060 | WWP2 |
rs1029088 | 0.0662 | 0.1202 | 0.1741 | 6262 | RYR2 |
rs1873423 | 0.0555 | 0.1193 | 0.1831 | 5579 | PRKCB |
rs16931011 | 0.0708 | 0.1177 | 0.1646 | 3709 | ITPR2 |
rs2920022 | 0.0779 | 0.1164 | 0.1548 | 5908 | RAP1B |
rs10153211 | −0.0367 | 0.1154 | 0.2675 | 2903 | GRIN2A |
rs9469718 | 0.0241 | 0.1139 | 0.2037 | 2914 | GRM4 |
rs2036109 | 0.0782 | 0.1133 | 0.1484 | 148 | ADRA1A |
rs2684777 | 0.0727 | 0.1133 | 0.1539 | 3480 | IGF1R |
rs629720 | 0.065 | 0.1106 | 0.1562 | 80 310 | PDGFD |
rs831550 | 0.0734 | 0.1096 | 0.1458 | 1716 | DGUOK |
rs2394538 | 0.0242 | 0.1093 | 0.1945 | 3098 | HK1 |
rs948992 | 0.068 | 0.1068 | 0.1456 | 9965 | FGF19 |
rs2174257 | 0.0668 | 0.105 | 0.1432 | 5592 | PRKG1 |
rs11755661 | 0.0412 | 0.1041 | 0.167 | 5071 | PARK2 |
rs1928168 | 0.0657 | 0.099 | 0.1322 | 401 237 | LINC00340 |
rs7100765 | 0.0434 | 0.0935 | 0.1436 | 5593 | PRKG2 |
rs1369450 | 0.0563 | 0.0924 | 0.1285 | 114 | ADCY8 |
rs1040336 | −0.0615 | 0.091 | 0.2435 | 2272 | FHIT |
rs10407144 | 0.0434 | 0.0872 | 0.131 | 773 | CACNA1A |
rs10794197 | 0.045 | 0.0869 | 0.1287 | 1488 | CTBP2 |
rs3734464 | 0.0247 | 0.0868 | 0.149 | 5071 | PARK2 |
rs7864216 | −0.0072 | 0.0863 | 0.1798 | 9630 | GNA14 |
rs4254056 | 0.0432 | 0.0846 | 0.126 | 338 751 | OR52L1 |
rs988920 | 0.0453 | 0.0842 | 0.1232 | 9229 | DLGAP1 |
rs12393998 | 0.0536 | 0.0839 | 0.1142 | 8450 | CUL4B |
rs872794 | 0.0413 | 0.0813 | 0.1213 | 3778 | KCNMA1 |
rs2503220 | −0.0527 | 0.0806 | 0.214 | 5142 | PDE4B |
rs10468681 | 0.0356 | 0.08 | 0.1243 | 2774 | GNAL |
rs7258489 | 0.0428 | 0.079 | 0.1152 | 808 | CALM3 |
rs153968 | 0.0379 | 0.0765 | 0.115 | 5144 | PDE4D |
rs944761 | 0.0361 | 0.076 | 0.1159 | 9568 | GABBR2 |
rs2161630 | 0.0232 | 0.0754 | 0.1276 | 10 725 | NFAT5 |
rs7097311 | 0.0294 | 0.0703 | 0.1111 | 5593 | PRKG2 |
rs2088747 | −0.0137 | 0.0693 | 0.1522 | 11 060 | WWP2 |
rs9832697 | −0.0766 | 0.0689 | 0.2144 | 10 242 | KCNMB2 |
rs7731023 | 0.0343 | 0.0683 | 0.1023 | 6502 | SKP2 |
rs7120612 | 0.0224 | 0.0659 | 0.1094 | 390 055 | OR52A6 |
rs2033655 | 0.0277 | 0.0647 | 0.1017 | 109 | ADCY3 |
rs10768450 | 0.0261 | 0.0645 | 0.1029 | 119 682 | OR51L1 |
rs3121309 | 0.018 | 0.0631 | 0.1083 | 89 780 | WNT3A |
rs7067880 | 0.0035 | 0.0629 | 0.1222 | 5593 | PRKG2 |
rs2296328 | 0.0202 | 0.0614 | 0.1027 | 3710 | ITPR3 |
rs10208384 | 0.0154 | 0.0591 | 0.1027 | 55 821 | ALLC |
rs5909975 | 0.029 | 0.0577 | 0.0864 | 2892 | GRIA3 |
rs10041275 | −0.003 | 0.0573 | 0.1177 | 2890 | GRIA1 |
rs2779531 | 0.0118 | 0.0559 | 0.1 | 9568 | GABBR2 |
rs1869901 | 0.0159 | 0.0539 | 0.0918 | 5330 | PLCB2 |
rs7809503 | 0.0119 | 0.0526 | 0.0932 | 51 422 | PRKAG2 |
rs1881638 | 0.0125 | 0.0525 | 0.0924 | 51 422 | PRKAG2 |
rs13359392 | −0.0036 | 0.0511 | 0.1058 | 2890 | GRIA1 |
rs2716191 | −0.0002 | 0.0466 | 0.0934 | 5608 | MAP2K6 |
rs11123677 | 0.0031 | 0.0462 | 0.0893 | 1261 | CNGA3 |
rs2937127 | −0.0358 | 0.0414 | 0.1187 | 11 060 | WWP2 |
rs2305347 | −0.0055 | 0.0392 | 0.0839 | 23 265 | EXOC7 |
rs2471226 | −0.0052 | 0.0389 | 0.083 | 107 | ADCY1 |
rs1881628 | −0.0107 | 0.0368 | 0.0843 | 51 422 | PRKAG2 |
rs362249 | −0.0042 | 0.0361 | 0.0764 | 51 807 | TUBA8 |
rs4708928 | −0.0031 | 0.036 | 0.0751 | 5071 | PARK2 |
rs1266348 | 0.0028 | 0.0359 | 0.0689 | 5634 | PRPS2 |
rs1186055 | −0.0032 | 0.0358 | 0.0747 | 5027 | P2RX7 |
rs1453541 | −0.1057 | 0.0354 | 0.1766 | 219 983 | OR4D6 |
rs3746821 | −0.0262 | 0.0335 | 0.0932 | 958 | CD40 |
rs220740 | −0.0085 | 0.0332 | 0.0749 | 10 846 | PDE10A |
rs2299679 | −0.014 | 0.0331 | 0.0801 | 5332 | PLCB4 |
rs887387 | −0.0028 | 0.0317 | 0.0662 | 489 | ATP2A3 |
rs7174459 | −0.0092 | 0.0288 | 0.0669 | 4735 | NEDD5 |
rs884399 | −0.0073 | 0.0281 | 0.0634 | 5581 | PRKCE |
rs5021051 | −0.0146 | 0.027 | 0.0686 | 2895 | GRID2 |
rs2903813 | −0.0208 | 0.0252 | 0.0711 | 3315 | HSPB1 |
rs1062935 | −0.0207 | 0.0245 | 0.0697 | 57 521 | RPTOR |
rs9347553 | −0.0154 | 0.0228 | 0.0609 | 5071 | PARK2 |
rs11072416 | −0.0259 | 0.0222 | 0.0703 | 6263 | RYR3 |
rs4553343 | −0.0304 | 0.0204 | 0.0712 | 2977 | GUCY1A2 |
rs7146234 | −0.0132 | 0.0202 | 0.0535 | 5495 | PPM1A |
rs848282 | −0.0191 | 0.0172 | 0.0536 | 55 120 | FANCL |
rs7962764 | −0.0495 | 0.0126 | 0.0748 | 5801 | PTPRR |
rs12726519 | −0.0377 | 0.0098 | 0.0572 | 5321 | PLA2G4A |
rs718949 | −0.0303 | 0.0093 | 0.0489 | 1488 | CTBP2 |
rs1954787 | −0.0264 | 0.0089 | 0.0441 | 2900 | GRIK4 |
rs2238079 | −0.0283 | 0.0084 | 0.045 | 775 | CACNA1C |
rs1337420 | −0.0398 | 0.008 | 0.0558 | 2898 | GRIK2 |
rs917948 | −0.0553 | 0.0075 | 0.0704 | 5536 | PPP5C |
rs3817222 | −0.1848 | 0.0055 | 0.1957 | 4660 | PPP1R12B |
rs17531147 | −0.0612 | 0.003 | 0.0672 | 55 970 | GNG12 |
rs6420481 | −0.0462 | 0.0014 | 0.0489 | 57 521 | RPTOR |
rs38557 | −0.0428 | −0.0018 | 0.0392 | 781 | CACNA2D1 |
rs1430158 | −0.0542 | −0.0055 | 0.0432 | 5136 | PDE1A |
rs1480645 | −0.0542 | −0.0055 | 0.0432 | 27 115 | PDE7B |
rs9173 | −0.0433 | −0.0061 | 0.0311 | 661 | POLR3D |
rs3924047 | −0.171 | −0.0072 | 0.1566 | 22 941 | SHANK2 |
rs756944 | −0.0596 | −0.0077 | 0.0442 | 5608 | MAP2K6 |
rs2248068 | −0.0467 | −0.0099 | 0.0269 | 83 439 | TCF7L1 |
rs12906456 | −0.0506 | −0.0116 | 0.0274 | 399 694 | SHC4 |
rs6593958 | −0.0485 | −0.0121 | 0.0243 | 2005 | ELK4 |
rs4647992 | −0.0995 | −0.0145 | 0.0706 | 4790 | NFKB1 |
rs17193 | −0.0551 | −0.0149 | 0.0253 | 10 846 | PDE10A |
rs702543 | −0.0508 | −0.0161 | 0.0186 | 5145 | PDE4D |
rs2283492 | −0.0595 | −0.0191 | 0.0213 | 115 | ADCY9 |
rs542413 | −0.0566 | −0.0201 | 0.0165 | 5581 | PRKCE |
rs731571 | −0.0608 | −0.0201 | 0.0207 | 4293 | MAP3K9 |
rs2069812 | −0.0559 | −0.0201 | 0.0157 | 3567 | IL5 |
rs697851 | −0.0648 | −0.0215 | 0.0219 | 3708 | ITPKB |
rs933150 | −0.0947 | −0.0244 | 0.0459 | 326 | AIRE |
rs4748444 | −0.0611 | −0.0246 | 0.012 | 783 | CACNB2 |
rs7235163 | −0.0738 | −0.0375 | −0.0011 | 9229 | DLGAP1 |
rs4575213 | −0.0731 | −0.038 | −0.0029 | 5592 | PRKG1 |
rs11048476 | −0.0801 | −0.0384 | 0.0033 | 3709 | ITPR2 |
rs4145903 | −0.0762 | −0.0395 | −0.0028 | 783 | CACNB2 |
rs10505029 | −0.1011 | −0.0404 | 0.0203 | 51 366 | UBR5 |
rs1122838 | −0.1213 | −0.0408 | 0.0396 | 9630 | GNA14 |
rs1993477 | −0.0818 | −0.0434 | −0.0049 | 51 366 | UBR5 |
rs2179871 | −0.0912 | −0.0454 | 0.0005 | 10 369 | CACNG2 |
rs10740244 | −0.0892 | −0.0467 | −0.0041 | 5592 | PRKG1 |
rs2503220 | −0.1151 | −0.0472 | 0.0207 | 5142 | PDE4B |
rs1065657 | −0.0838 | −0.0488 | −0.0139 | 51 465 | UBE2J1 |
rs12714137 | −0.1234 | −0.0528 | 0.0179 | 83 439 | TCF7L1 |
rs7176475 | −0.1275 | −0.0537 | 0.0201 | 123 746 | PLA2G4E |
rs1937671 | −0.0953 | −0.0545 | −0.0138 | 5592 | PRKG1 |
rs7079293 | −0.0902 | −0.0549 | −0.0196 | 10 581 | SORBS2 |
rs1003854 | −0.1288 | −0.0551 | 0.0187 | 326 | AIRE |
rs919741 | −0.0962 | −0.0565 | −0.0169 | 815 | CAMK2A |
rs750438 | −0.1075 | −0.0574 | −0.0074 | 11 184 | MAP4K1 |
rs6139034 | −0.0997 | −0.0576 | −0.0154 | 3704 | ITPA |
rs1554606 | −0.1087 | −0.0599 | −0.0111 | 6018 | IL6 |
rs7108524 | −0.0938 | −0.0603 | −0.0267 | 81 286 | OR51E3 |
rs1002424 | −0.1023 | −0.0626 | −0.0229 | 5562 | PRKAA1 |
rs2239316 | −0.1033 | −0.0631 | −0.0228 | 1387 | CREBBP |
rs5030949 | −0.157 | −0.0653 | 0.0264 | 3098 | HK1 |
rs17682073 | −0.1006 | −0.066 | −0.0315 | 6262 | RYR2 |
rs1872902 | −0.1108 | −0.0665 | −0.0221 | 80 310 | PDGFD |
rs11602256 | −0.1035 | −0.0671 | −0.0308 | 4041 | LRP5 |
rs10770675 | −0.1088 | −0.0675 | −0.0262 | 5139 | PDE3A |
rs9347587 | −0.1058 | −0.0696 | −0.0334 | 5071 | PARK2 |
rs4643498 | −0.1246 | −0.0778 | −0.0309 | 5136 | PDE1A |
rs2451078 | −0.2263 | −0.0802 | 0.0659 | 93 492 | TPTE2 |
rs3771832 | −0.2236 | −0.0803 | 0.063 | 6869 | TACR1 |
rs6508808 | −0.1506 | −0.0809 | −0.0112 | 6261 | RYR1 |
rs3748386 | −0.1475 | −0.0831 | −0.0187 | 11 060 | WWP2 |
rs12207523 | −0.1622 | −0.0831 | −0.0041 | 5169 | ENPP3 |
rs2779556 | −0.1702 | −0.0867 | −0.0031 | 9568 | GABBR2 |
rs7918241 | −0.1351 | −0.0898 | −0.0444 | 1488 | CTBP2 |
rs2069837 | −0.1527 | −0.0924 | −0.0321 | 6018 | IL6 |
rs12972670 | −0.1359 | −0.0926 | −0.0493 | 390 892 | OR7A10 |
rs2652452 | −0.1316 | −0.0989 | −0.0661 | 3760 | KCNJ3 |
rs9469529 | −0.1532 | −0.1004 | −0.0475 | 3710 | ITPR3 |
rs7677751 | −0.1496 | −0.1023 | −0.0551 | 5156 | PDGFRA |
rs7926083 | −0.1395 | −0.1028 | −0.0661 | 341 276 | OR10A2 |
rs12577638 | −0.1598 | −0.11 | −0.0601 | 2900 | GRIK4 |
rs11102321 | −0.1838 | −0.1104 | −0.037 | 5906 | RAP1A |
rs1050395 | −0.1576 | −0.1154 | −0.0732 | 490 | ATP2B1 |
rs8103699 | −0.1586 | −0.1196 | −0.0805 | 773 | CACNA1A |
rs7971175 | −0.1566 | −0.1201 | −0.0836 | 5502 | PPP1R1A |
rs11602535 | −0.166 | −0.1236 | −0.0812 | 219 981 | OR5A2 |
rs11644436 | −0.1733 | −0.1253 | −0.0774 | 5336 | PLCG2 |
rs10762342 | −0.1909 | −0.1283 | −0.0658 | 5592 | PRKG1 |
rs11583646 | −0.2023 | −0.1311 | −0.0599 | 6262 | RYR2 |
rs6118611 | −0.1819 | −0.1321 | −0.0822 | 5332 | PLCB4 |
rs2587891 | −0.1722 | −0.1322 | −0.0922 | 2775 | GNA01 |
rs4651343 | −0.1739 | −0.1333 | −0.0926 | 5321 | PLA2G4A |
rs1659506 | −0.1761 | −0.1363 | −0.0966 | 23 295 | MGRN1 |
rs2271986 | −0.1968 | −0.1367 | −0.0767 | 4842 | NOS1 |
rs2302898 | −0.1775 | −0.1375 | −0.0975 | 10 381 | TUBB3 |
rs6971999 | −0.2088 | −0.1425 | −0.0763 | 26 212 | OR2F2 |
rs2272197 | −0.1896 | −0.1485 | −0.1073 | 4216 | MAP3K4 |
rs4947963 | −0.1867 | −0.1493 | −0.1119 | 1956 | EGFR |
rs7536307 | −0.1876 | −0.1507 | −0.1138 | 26 289 | AK5 |
rs12462609 | −0.2085 | −0.151 | −0.0936 | 773 | CACNA1A |
rs1517521 | −0.2925 | −0.152 | −0.0114 | 23 180 | RFTN1 |
rs8063461 | −0.1865 | −0.1534 | −0.1203 | 7249 | TSC2 |
rs888817 | −0.1937 | −0.1604 | −0.1272 | 5924 | RASGRF2 |
rs922445 | −0.2435 | −0.1659 | −0.0883 | 2775 | GNAO1 |
rs339408 | −0.203 | −0.167 | −0.131 | 9322 | TRIP10 |
rs7512378 | −0.2068 | −0.1691 | −0.1314 | 55 811 | ADCY10 |
rs7870040 | −0.2408 | −0.1892 | −0.1376 | 774 | CACNA1B |
rs3904668 | −0.2423 | −0.2069 | −0.1715 | 29 993 | PACS1N1 |
rs12716928 | −0.2784 | −0.2073 | −0.1362 | 5336 | PLCG2 |
rs6679454 | −0.262 | −0.2305 | −0.199 | 1601 | DAB2 |
rs10783235 | −0.2951 | −0.2549 | −0.2147 | 121 275 | OR10AD1 |
rs3910363 | −0.3063 | −0.2611 | −0.2159 | 57 495 | K1AA1239 |
rs16853387 | −0.3799 | −0.3367 | −0.2935 | 26 154 | ABCA12 |
rs17629494 | −0.5242 | −0.507 | −0.4898 | 5592 | PRKG1 |
rs4648135 | −0.5807 | −0.526 | −0.4713 | 4790 | NFKB1 |
rs17643974 | −0.5527 | −0.5424 | −0.5321 | 1488 | CTBP2 |
rs1243679 | −0.5771 | −0.5674 | −0.5577 | 341 799 | OR6S1 |
rs2240228 | −0.5942 | −0.5816 | −0.569 | 26 532 | OR10H3 |
rs260808 | −0.5938 | −0.5836 | −0.5734 | 80 310 | PDGFD |
rs4128941 | −0.6166 | −0.6082 | −0.5998 | 8313 | AXIN2 |
rs769052 | −0.6321 | −0.6235 | −0.6149 | 7322 | UBE2D2 |
rs984371 | −0.7273 | −0.7181 | −0.7089 | 219 437 | OR5L1 |
rs4308342 | −1.0196 | −0.8938 | −0.768 | 1633 | DCK |
rs11145506 | −0.94 | −0.9172 | −0.8944 | 9630 | GNA14 |
rs905646 | −0.97 | −0.9624 | −0.9548 | 2915 | GRM5 |
rs6483362 | −0.9894 | −0.9661 | −0.9428 | 2915 | GRM5 |
rs12317962 | −1.4869 | −1.32 | −1.1531 | 27 345 | KCNMB4 |
rs8053370 | −1.7162 | −1.6956 | −1.675 | 2775 | GNAO1 |
