Table 1B Rare variants analysis using the KBAC method after filtering out: tolerated and non-conserved, non-exonic and variants that in controls had a MAF >0.01
From: The PHF21B gene is associated with major depression and modulates the stress response
Chr | Position start | Position stop | Gene name | P-value (one-sided) | KBAC (one-sided) | FDR (one-sided) | Sample size used | # Markers | # Multi-marker genotypes |
|---|---|---|---|---|---|---|---|---|---|
19 | 17 434 032 | 17 445 638 | ANO8 | 9.99E−04 | 0.08 | 0.03 | 399 | 2 | 4 |
19 | 11 485 383 | 11 487 627 | C19orf39 | 9.99E−04 | 0.06 | 0.03 | 399 | 2 | 4 |
19 | 3 136 191 | 3 163 766 | GNA15 | 9.99E−04 | 0.07 | 0.04 | 399 | 3 | 4 |
15 | 78 287 327 | 78 369 994 | TBC1D2B | 9.99E−04 | 0.07 | 0.04 | 399 | 3 | 5 |
12 | 6 419 602 | 6 437 672 | PLEKHG6 | 9.99E−04 | 0.07 | 0.05 | 399 | 5 | 6 |
19 | 19 040 010 | 19 052 041 | HOMER3 | 2.00E−03 | 0.06 | 0.04 | 399 | 3 | 4 |
19 | 14 843 205 | 14 889 353 | EMR2 | 2.00E−03 | 0.10 | 0.04 | 399 | 10 | 13 |
17 | 73 823 308 | 73 840 798 | UNC13D | 2.00E−03 | 0.09 | 0.04 | 399 | 8 | 14 |
12 | 55 945 011 | 55 945 940 | OR6C4 | 2.00E−03 | 0.07 | 0.04 | 399 | 6 | 7 |
11 | 67 776 048 | 67 796 743 | ALDH3B1 | 2.00E−03 | 0.07 | 0.05 | 399 | 4 | 5 |
10 | 135 051 408 | 135 055 433 | VENTX | 3.00E−03 | 0.06 | 0.04 | 399 | 2 | 4 |
9 | 139 607 024 | 139 619 170 | FAM69B | 3.00E−03 | 0.08 | 0.04 | 399 | 1 | 3 |
8 | 145 747 761 | 145 752 416 | LRRC24 | 3.00E−03 | 0.07 | 0.05 | 399 | 3 | 5 |
7 | 16 639 401 | 16 685 442 | ANKMY2 | 3.00E−03 | 0.09 | 0.05 | 399 | 3 | 4 |
4 | 2 965 343 | 3 042 474 | GRK4 | 3.00E−03 | 0.14 | 0.05 | 399 | 7 | 10 |
17 | 40 950 854 | 40 963 605 | CNTD1 | 4.00E−03 | 0.07 | 0.04 | 399 | 4 | 5 |
17 | 40 834 632 | 40 852 011 | CNTNAP1 | 4.00E−03 | 0.07 | 0.04 | 399 | 4 | 5 |
16 | 1 664 641 | 1 727 909 | CRAMP1L | 4.00E−03 | 0.07 | 0.04 | 399 | 6 | 7 |
12 | 110 220 892 | 110 271 212 | TRPV4 | 4.00E−03 | 0.05 | 0.04 | 399 | 4 | 6 |
11 | 4 615 269 | 4 616 243 | OR52I1 | 4.00E−03 | 0.06 | 0.05 | 399 | 1 | 2 |
11 | 1 012 824 | 1 036 706 | MUC6 | 4.00E−03 | 0.11 | 0.05 | 399 | 14 | 18 |
9 | 125 486 269 | 125 487 204 | OR1L4 | 4.00E−03 | 0.08 | 0.05 | 399 | 3 | 5 |
17 | 48 638 449 | 48 704 542 | CACNA1G | 5.00E−03 | 0.07 | 0.04 | 399 | 5 | 7 |
14 | 44 973 354 | 44 976 499 | FSCB | 5.00E−03 | 0.05 | 0.05 | 399 | 5 | 6 |
11 | 66 059 373 | 66 064 135 | TMEM151A | 5.00E−03 | 0.05 | 0.05 | 399 | 1 | 2 |
10 | 72 530 995 | 72 545 157 | C10orf27 | 5.00E−03 | 0.07 | 0.05 | 399 | 2 | 4 |
9 | 130 928 344 | 130 966 662 | CIZ1 | 5.00E−03 | 0.07 | 0.05 | 399 | 6 | 8 |
