Table 2 Exome array meta-analysis top 10 variants

From: Genome-wide common and rare variant analysis provides novel insights into clozapine-associated neutropenia

CHR

Variant

rs ID

Position

A1

CLOZUK P-value

CIAC P-value

Meta-analysis P-value

Gene

Location

Function

4

exm387558

rs201099591

7 436 363

A

2.48 × 10−3

1.31 × 10−4

1.10 × 10−6

PSAPL1, SORCS2

Exonic, intronic

Missensea

7

exm622984

rs17139320

63 726 370

G

3.96 × 10−3

2.87 × 10−4

3.70 × 10−6

ZNF679

Exonic

Missensea

8

exm729894

rs201071539

145 003 862

A

2.19 × 10−3

1.69 × 10−3

1.19 × 10−5

PLEC

Exonic

Missensea

19

exm1421170

rs2591594

9 076 728

A

4.66 × 10−3

3.26 × 10−3

4.52 × 10−5

MUC16

Exonic

Missenseb

12

exm988839

rs1546308

21 176 135

C

1.25 × 10−4

0.0679

9.13 × 10−5

SLCO1B7, SLCO1B3

Exonic, intronic

Missensea

1

exm23767

rs12073549

17 720 545

T

1.60 × 10−3

0.0163

9.31 × 10−5

PADI6

Exonic

Synonymous

15

exm1186658

rs117116488

89 390 513

T

2.76 × 10−4

0.0448

9.73 × 10−5

ACAN

Exonic

Missenseb

12

exm981950

rs79149293

8 975 873

G

5.66 × 10−5

0.0967

1.01 × 10−4

A2ML1

Exonic

Missensec

12

exm995289

rs138912646

42 711 606

A

3.94 × 10−5

0.1613

1.79 × 10−4

ZCRB1, PPHLN1

Exonic, intronic

Missensea

12

exm1051374

rs143584336

130 921 539

A

1.22 × 10−4

0.1144

2.12 × 10−4

RIMBP2

Exonic

Missensea

  1. Abbreviations: A1, minor reference allele; CHR, chromosome; CIAC, Clozapine-Induced Agranulocytosis Consortium.
  2. Results are ordered by meta-analysis P-value. Predicted function of non-synonymous variants.
  3. aBenign.
  4. bPossibly damaging.
  5. cProbably damaging. Further details, including minor allele frequencies, are available in Supplementary Data 3.