Table 1 Somatically acquired genomic variants of all classes in a SCLC genome
From: A small-cell lung cancer genome with complex signatures of tobacco exposure
Variant | Number |
|---|---|
Somatic substitution | 22,910 |
Coding | 134 (0.6%) |
Nonsense | 4 |
Non-synonymous | 94 |
Synonymous | 36 |
Non-coding, transcribed | 182 (0.8%) |
Untranslated region | 119 |
Non-coding RNA | 63 |
Intronic | 6,463 (28%) |
Splice site | 5 |
Other intronic | 6,458 |
Intergenic | 16,131 (70%) |
Insertions and deletions | 65 |
Coding (frameshift) | 2 (3%) |
Intronic | 25 (38%) |
Intergenic | 38 (58%) |
Genomic rearrangements | 58 |
Deletions | 18 (31%) |
Tandem duplications | 9 (16%) |
Other non-inverted intrachromosomal rearrangements | 9 (16%) |
Inverted intrachromosomal rearrangements | 15 (26%) |
Interchromosomal rearrangements | 7 (12%) |
Copy number segments | 334 |
