Table 1 Vibrio fisheri, E. coli, Rhodopseudomonas palustris and Homo sapiens

From: An integrated semiconductor device enabling non-optical genome sequencing

 

V. fisheri

R. palustris

E. coli

E. coli

E. coli

H. sapiens

GC content

38%

65%

51%

51%

51%

41%

Genome size

4.2 Mb

5.5 Mb

4.7 Mb

4.7 Mb

4.7 Mb

2.9 Gb

Number of runs x ion chip size

1 × 1.2 M

1 × 1.2 M

1 × 1.2 M

1 × 6.1 M

1 × 11 M

1,601 × 1.2 M267 × 6.1 M28 × 11.1 M

Fold coverage

6.2-fold

6.9-fold

11.3-fold

36.2-fold

58.4-fold

10.6-fold

Coverage

96.80%

99.64%

99.99%

100.00%

100.00%

99.21%

Reads ≥21 bases

261,313

444,750

507,198

1,852,931

2,594,031

366,623,578

Reads ≥50 bases

233,049

399,360

487,420

1,698,852

2,343,880

306,042,650

Reads ≥100 bases

156,391

160,726

400,743

1,012,918

1,779,237

139,624,090

Mapped bases

26.0 Mb

37.8 Mb

47.6 Mb

169.6 Mb

273.9 Mb

30.2 Gb

  1. Coverage shows percentage of genome covered based on one or more reads mapping to each base of the reference genome. Reads align with 98% or greater accuracy.
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