Extended Data Table 1 Whole genome sequence depth of coverage, haplogroup and language assignments for the Aboriginal Australian samples

From: A genomic history of Aboriginal Australia

  1. *The depth of coverage (DoC) is the average number of reads covering every position in the genome (hg19) after duplicate removal (see Supplementary Information section S03).
  2. †The average depth of coverage on the mitochondrial genome (mtDNA) is 3,484 ± 1,515 (mean ± s.d.) and haplogroups were called with haplogrep (http://haplogrep.uibk.ac.at/) and haplofind (https://haplofind.unibo.it/), see Supplementary Information section S12 for details and references.
  3. ‡The average depth of coverage on the Y chromosome (Ychr) is 28.9 ± 4.5 (mean ± s.d.). Haplogroup assignment was performed with an in-house script that matched our SNPs with the classification provided in ISOGG version 10.08, see Supplementary Information section S12 for details and references.
  4. §Language group with which the speaker self-identifies, or to which they were assigned. Where more than one language is given, speakers either identified with more than one group, or they could not be assigned to a single group with certainty.
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