Extended Data Figure 6: Number of SVs and repeat composition.

a, Overall distribution of SVs. By direct comparison between AK1 assembly and GRCh37 reference genome, deletion (red), insertion (blue), inversion (green), and complex (grey) variants were detected. Outer pie chart represents new variants for each SV types. In total, 65% (11,927) of the SVs were unreported previously. b, Repeat composition of AK1 insertion and deletion. Both insertions and deletions are mostly composed of mobile elements or tandem repeats. Complex is defined as the SVs having either several annotated repeat elements, or at least 30% of the remaining sequence not annotated as repeat.