Table 1 Samples and genomes by region

From: Zika virus evolution and spread in the Americas

Country or territory

Samples

Samples with metagenomic data

Amplicon sequencing genomes

Hybrid capture genomes

Total genomes

Brazil

53

12

27

7

27

Colombia

20

0

4

2

4

Dominican Republic

45

7

30

9

30

Guatemala/El Salvador

3

0

1

0

1

Haiti

4

0

1

0

1

Honduras

20

6

18

8

18

Jamaica

20

0

5

0

5

Martinique

3

0

1

0

1

Puerto Rico

15

0

3

1

3

Continental US

36

12

20

10

20

Other

10

1

0

0

0

Total

229

38

110

37

110

  1. Sample source information and sequencing results for 229 clinical and mosquito pool samples. Continental United States includes eight mosquito pool samples; all others are clinical samples from the Americas. In the final column, genomes generated by both methods are counted only once. ‘Other’ includes regions without a ZIKV genome included in downstream analysis.