Extended Data Table 1 Viruses other than Zika uncovered by unbiased sequencing
- a, Viral species other than Zika were found by unbiased sequencing of 38 samples. Column 3, number of reads in a sample belonging to a species as a raw count and a per cent of total reads. Column 4, per cent genome assembled based on the number of unambiguous bases called. We identified cell fusing agent virus (a flavivirus) and deformed wing virus-like genomes in mosquito pools, and dengue virus type 1, JC polyomavirus, and JC polyomavirus-like genomes in clinical samples. All assemblies had ≥95% sequence identity to a reference sequence for the listed species, except cell fusing agent virus in USA_2016_FL-06-MOS (91%) and dengue virus type 1 in BLM_2016_MA-WGS16-006-SER (92%). The dengue virus type 1 genome showed ≥95% sequence identity to other available isolates of the virus. b, Contigs assembled from unbiased sequencing data of eight mosquito pools. Column 2, number of contigs assembled. Column 3, number of contigs classified by BLASTN/BLASTX43. Column 4, number of contigs hitting a viral species. Column 5, number of contigs hitting a viral species with <80% amino acid identity to the best hit. Each column is a subset of the previous column. Contigs in column 5 are considered to be likely to be novel. Last row lists counts, after removing duplicate contigs, for all mosquito pools combined. Supplementary Table 4 lists the unique viral contigs and their best hits.
