Table 1 Chickpea genome assembly, gene annotation and non-protein coding genes
From: Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
All scaffold (≥1K) | Scaffold ≥ 2K | |
|---|---|---|
Assembly features | ||
Number of scaffolds | 7,163 | 3,659 |
Total span | 532.29 Mb | 527.50 Mb |
N50 (scaffolds) | 39.99 Mb | 39.99 Mb |
Longest scaffold | 59.46 Mb | 59.46 Mb |
Number of contigs | 62,619 | 56,440 |
Longest contig | 258.19 kb | 258.19 kb |
N50 (contigs) | 23.54 kb | 23.69 kb |
GC content | 30.78% | 30.76% |
Gene models | ||
Number of gene models | 28,269 | |
Number of gene models (without transposable elements) | 28,255 | |
Mean transcript length | 3,055.39 | |
Mean coding sequence length | 1,166.44 bp | |
Mean number of exons per gene | 4.93 | |
Mean exon length | 236.51 bp | |
Mean intron length | 480.43 bp | |
Number of genes annotated | 25,365 (89.73%) | |
Number of genes unannotated | 2,904 (10.27%) | |
Non-protein coding genes | ||
Number of miRNA genes | 420 | |
Mean length of miRNA genes | 122.58 bp | |
miRNA genes share in genome | 0.01% | |
Number of rRNA fragments | 478 | |
Mean length of rRNA fragments | 178.52 bp | |
rRNA fragments share in genome | 0.02% | |
Number of tRNA genes | 684 | |
Mean length of tRNA genes | 75.04 bp | |
tRNA genes share in genome | 0.01% | |
Number of snRNA genes | 647 | |
Mean length of snRNA genes | 118.26 bp | |
snRNA genes share in genome | 0.01% |
