Table 2 Organization of repetitive sequences in the chickpea genome
From: Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
Length (bp) | In total repeat (%) | In genome (%) | Repeat number | |
|---|---|---|---|---|
Total retrotransposons | 238,385,413 | 78.50 | 45.64 | 617,505 |
LINE retrotransposons | (8,734,558) | 2.88 | 1.67 | 40,921 |
SINE retrotransposons | (90,666) | 0.03 | 0.02 | 515 |
LTR retrotransposons | ||||
Gypsy | (103,145,144) | 33.97 | 19.75 | 230,959 |
Copia | (96,381,561) | 31.74 | 18.45 | 279,624 |
LTR | (26,170,242) | 8.62 | 5.01 | 56,368 |
Other | (3,796,681) | 1.25 | 0.73 | 8,276 |
Other retrotransposons | (66,561) | 0.02 | 0.01 | 842 |
Total DNA transposons | 48,715,210 | 16.4 | 9.32 | 197,959 |
Total unclassified elements | 16,560,076 | 5.45 | 3.17 | 38,050 |
Total transposable elements | ||||
Redundant | 303,660,699 | 58.14 | 853,514 | |
Nonredundant | 258,057,703 | 49.41 |
