Table 1 G. hirsutum genome assembly and annotation
Category | Number | N50 (kb) | Longest (kb) | Size (Mb) | Percent of the assembly |
|---|---|---|---|---|---|
Total contigs | 44,816 | 80 | 784 | 2,090 | – |
Total scaffolds | 8,591 | 764 | 8,400 | 2,173 | 100.0 |
Anchored and oriented scaffolds | 4,023 | 853 | 8,400 | 1,923 | 88.5 |
Genes annotated | 76,943 | 220 | 9.5 | ||
miRNAs | 602 | 0.07 | <0.01 | ||
rRNAs | 2,153 | 0.6 | <0.01 | ||
tRNAs | 2,050 | 0.2 | 0.01 | ||
snRNAs | 8,325 | 0.9 | 0.04 | ||
Repeat sequences | – | 1,471 | 67.2 |
