Figure 2: CIRCOS visualization of different data at the genome-wide level.
From: Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
(a) Karyotype of maize genome. (b) Comparison of gene density between genes covered by RefGen_v3 and the PacBio data set. Gene density was calculated in a 1-Mb sliding window at 20 kb intervals. (c) Comparison of isoform density between RefGen_v3 and PacBio sequences; isoforms density was calculated in a 1-Mb sliding window at 20 kb intervals. (d) CG methylation level. (e) CHG methylation level. (f) CHH methylation level. Each methylation in 1 Mb bins on each chromosome. (g) Repeat density in genome. (h) lncRNA density, in 1 Mb bins on each chromosome. (i) Linkage of fusion transcripts: purple, intra-chromosomal; dark yellow, inter-chromosomal.
