Table 3 Chart shows transcription rates for genes within the six k-means clusters.

From: Counteracting H3K4 methylation modulators Set1 and Jhd2 co-regulate chromatin dynamics and gene transcription

Cluster

mRNA/h

P-value

GO terms

1

4.0–15.9

0.001

Ribosomal large subunit biogenesis

2

1.0–3.9

<0.001

Metabolic process, RNA metabolic process, Mitotic cell cycle

2

4.0–15.9

0.02

Ribosomal biogenesis, Metabolic process, ATP metabolic proces

3

<1.0

0.002

 

5

1.0–3.9

0.029

Transcription, response to stimulus, transport, chromatin modification, cell cycle

5

4.0–15.9

<0.001

Proteolysis, alpha-amino acid metabolic process

5

>50.0

0.004

Translation

6

4.0–15.9

<0.001

Transport, oxoacid metabolic process

6

16.0–50.0

<0.001

Small molecule metabolic process, steroid biosynthetic process

6

>50.0

<0.001

Translation, glycolytic process

  1. They were determined by intersecting genes in each cluster with groups of yeast genes classified based on increasing transcription rates (mRNA/h)52: <1, 1–3.9, 4–15.9, 16–50 and >50. Correlation P-value for each intersection is shown. Gene ontology (GO) terms enriched amongst the common intersecting genes are also listed.
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