Table 2 Associations between comb and fecundity phenotypes in the wild × domestic intercross of genes in feralisation sweeps in Kauai.
From: Feralisation targets different genomic loci to domestication in the chicken
Trait | Genes | P value | chr | Position | Probe |
|---|---|---|---|---|---|
Broodiness | SEMA3A | 0.0032 | 1 | 8,522,175 | NM_204977_SEMA3A |
Comb mass | ARHGAP25 | 0.0040 | 13 | NM_001030883_ARHGAP25 | |
Comb mass | DPYSL3 | 0.0101 | 13 | 17,454,812 | NM_204493_DPYSL3* |
Comb mass | STK32A | 0.0016 | 13 | 17,432,186 | ENSGALT00000012246_STK32A |
Egg number (brooding trial) | EFR3A | 0.0018 | 2 | 140,874,788 | ENSGALT00000026233_ENSGALG00000016270 |
Egg number (brooding trial) | LOC419677 | 0.0033 | 23 | 5,463,429 | ENSGALT00000006094_ENSGALG00000003838 |
Egg number (brooding trial) | NSL1 | 0.0008 | 3 | 21,140,905 | NM_001044646_NSL1 |
Egg number (brooding trial) | PPIE | 0.0041 | 23 | 5,415,385 | ENSGALT00000021831_ENSGALG00000013383 |
Egg number (brooding trial) | SEMA3A | 0.0017 | 1 | 8,522,175 | NM_204977_SEMA3A |
Egg number (brooding trial) | STX2 | 0.0038 | 15 | 2,912,110 | ENSGALT00000034743_ENSGALG00000002536 |
Mean egg weight (fecundity trial) | NT5C1A | 0.0030 | 23 | 5,450,092 | ENSGALT00000006051_ENSGALG00000003816 |
Mean egg weight (fecundity trial) | PABPC4 | 0.0003 | 23 | 5,420,069 | ENSGALT00000006028_ENSGALG00000003800 |
Total egg production (brooding trial) | EFR3A | 0.0041 | 2 | 140,874,788 | ENSGALT00000026233_ENSGALG00000016270 |
Total egg production (brooding trial) | BMP8A | 0.0019 | 23 | 5,408,458 | ENSGALT00000040607_ENSGALG00000024064 |
Total egg production (brooding trial) | LOC419677 | 0.0038 | 23 | 5,463,429 | ENSGALT00000006094_ENSGALG00000003838 |
Total egg production (brooding trial) | MOCS3 | 0.0033 | 20 | 13,729,490 | ENSGALT00000012964_ENSGALG00000007986 |
Total egg production (brooding trial) | NSL1 | 0.0019 | 3 | 21,140,905 | NM_001044646_NSL1 |
Total egg production (brooding trial) | PABPC4 | 0.0037 | 23 | 5,420,069 | ENSGALT00000006028_ENSGALG00000003800 |
Total egg production (brooding trial) | PPIE | 0.0026 | 23 | 5,415,385 | ENSGALT00000021831_ENSGALG00000013383 |
Total egg production (brooding trial) | SEMA3A | 0.0039 | 1 | 8,522,175 | NM_204977_SEMA3A |
