Table 1 The top 10 informative features to predict growth rate for each of the three layers.
Rank | Gene | Function | Protein | Function | Metabolite | Category |
|---|---|---|---|---|---|---|
1 | wcaF (0.26) | Predicted acyl transferase | TufB (0.12) | Elongation factor Tu | Cytosine (0.12) | Nucleobase |
2 | yffO (0.17) | CPZ-55 prophage; predicted protein | Syd (0.04) | SecY-interacting protein | L-glutamine (0.11) | Amino acids |
3 | mreB (0.09) | Dynamic cytoskeletal protein MreB | AnsA (0.04) | Asparaginase I | L-alanine (0.07) | Amino acids |
4 | yfiP (0.09) | Conserved protein | ParC (0.04) | Dimer of topoisomerase IV subunit A | L-threonine (0.07) | Amino acids |
5 | tyrP (0.08) | Tyrosine:H+ symporter TyrP | PyrH (0.01) | UMP kinase | Nicotinamide (0.04) | Vitamin |
6 | ycbT (0.08) | Predicted fimbrial-like adhesin protein | TrxB (0.01) | Thioredoxin reductase | L-valine (0.04) | Amino acids |
7 | gfcC (0.08) | Conserved protein | GloB (0.01) | Glyoxalase II | Azelaic acid (0.04) | Fatty acids and conjugates |
8 | solA (0.08) | N-methyltryptophan oxidase | SerS (0.009) | Seryl-tRNA synthetase | D-glycerol-1-phosphate (0.02) | Glycerolipid metabolism |
9 | fecA (0.08) | Ferric citrate outer membrane porin FecA | RpsL (0.009) | 30S ribosomal subunit protein S12 | L-ornithine (0.008) | Non-proteinogen amino acid |
10 | ynfB (0.07) | Predicted protein | PotD (0.004) | Putrescine/spermidine ABC transporter | − | − |
