Figure 1: B. oleracea pangenome.
From: The pangenome of an agronomically important crop plant Brassica oleracea
SNP density, pangenome contig placement on TO1000 chromosomes and variable gene density. Each chromosome is represented by three tracks, which from the top correspond to the following: (1) SNP density (black line)—each chromosome was split into 500 kb bins, the number of SNPs in bins is plotted as a function of bin position; (2) pangenome contig placement on TO1000 chromosomes (coloured rectangle)—contigs originating from each step of pangenome construction were placed along the chromosomes and colour coded according to the line; (3) variable gene density (burgundy line)—the number of variable genes in each 500 kb bin is divided by the total number of genes.
