Table 1 KOREF build statistics along the assembly steps.
| Â | Contig | Scaffold | Whole-genome optical mapping | Long reads (PacBio and TSLR) | Chromosomes (assessment using BioNano maps)* | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Size (Kb) | No. | Size (Mb) | No. | Size (Mb) | No. | Size (Mb) | No. | Size (Mb) | No. |
N90 | 8.59 | 89,240 | 3.09 | 178 | 3.86 | 140 | 3.53 | 143 | 81.54 | 19 |
N80 | 14.62 | 63,987 | 6.45 | 116 | 9.45 | 92 | 9.26 | 93 | 103.05 | 16 |
N70 | 20.42 | 47,417 | 10.45 | 81 | 14.47 | 67 | 14.53 | 67 | 136.43 | 13 |
N60 | 26.58 | 35,099 | 16.16 | 59 | 19.56 | 49 | 19.36 | 50 | 137.59 | 11 |
N50 | 33.38 | 25,446 | 19.85 | 42 | 25.93 | 36 | 26.08 | 36 | 155.88 | 8 |
Longest | 334.16 | — | 81.91 | — | 101.22 | — | 101.48 | — | 251.92 | — |
Gaps | 0% | — | 1.65% | — | 1.75% | — | 1.06% | — | 9.44% | — |
Total (≥200 bp) | 2.87 Gb | 230,514 | 2.92 Gb | 68,170 | 2.92 Gb | 68,103 | 2.94 Gb | 68,451 | 3.12 Gb | 24 |
Total (≥10 Kb) | 2.52 Gb | 82,254 | 2.88 Gb | 1,243 | 2.88 Gb | 1,176 | 2.90 Gb | 1,369 | 3.12 Gb | 24 |
