Table 3 Summary of SVs in eight human assemblies compared with GRCh38.
Assembly | Total SVs | Novel SVs (insertions and deletions only; %) | SVs in repetitive regions (%) | SVs in segmentally duplicated regions (%) | Assembly specific SVs (insertions and deletions only; %) | SVs shared with the CHM1 PacBio read mapping results (insertions and deletions only; %) |
|---|---|---|---|---|---|---|
KOREF_CS,L,M | 9,838 | 8,392 (85.7) | 6,992 (71.1) | 912 (9.3) | 6,691 (68.3) | 955 (9.7) |
MongolianS | 12,830 | 10,775 (87.7) | 8,929 (69.6) | 1,242 (9.7) | 9,101 (74.1) | 834 (6.8) |
YH_2.0S | 5,027 | 4,664 (93.8) | 4,119 (81.9) | 633 (12.6) | 3,063 (61.6) | 148 (3.0) |
CHM1_PacBio_r2L | 3,454 | 3,130 (92.0) | 2,340 (67.7) | 1,002 (29.0) | 2,448 (72.0) | 301 (8.8) |
CHM1_1.1S,B | 3,926 | 3,258 (83.7) | 2,848 (72.5) | 394 (10.0) | 2,800 (71.9) | 487 (12.5) |
NA12878_singleL,M | 4,859 | 4,171 (86.7) | 3,339 (68.7) | 1,041 (21.4) | 3,492 (72.6) | 400 (8.3) |
NA12878_AllpathsS | 5,179 | 4,649 (91.0) | 4,014 (77.5) | 378 (7.3) | 3,787 (74.1) | 269 (5.3) |
AfricanS | 10,772 | 10,026 (94.0) | 8,362 (77.6) | 425 (3.9) | 8,935 (83.8) | 212 (2.0) |
