Figure 5: Regulatory potential of the RepBase-consensus TE sequence in mouse ESCs.
From: Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus
(a) Luciferase fold change of the RepBase-consensus TE sequence of the four candidate RLTR9 TE subfamilies, in mouse ESCs. The luciferase fold change values represent the average of three technical replicates, and are plotted on a log10 scale. Error bars represent s.d. (b) Luciferase fold change of the RepBase-consensus TE sequence when individual motifs were mutated normalized to the unmutated TE sequence’s regulatory potential. Error bars represent s.d. (c) Comparing the regulatory potential of genomic and RepBase-consensus TE sequences in mouse ESCs. Comparison of the regulatory potential of genomic (y axis) and RepBase-consensus (x axis) TE sequences. The diagonal represents y=x on this plot.
