Figure 4: NMR analysis of PMP binding to non-farnesylated and farnesylated PEX19 CTD. | Nature Communications

Figure 4: NMR analysis of PMP binding to non-farnesylated and farnesylated PEX19 CTD.

From: Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19

Figure 4

(a) Comparison of 1H,15N HSQC spectra of 100 μM non-farnesylated CTD free (black) and in the presence of 10-fold excess of the ALDP-derived peptide (cyan). (b) Comparison of 1H,15N HSQC spectra of 100 μM farnesylated PEX19 CTD free (black) and in the presence of 5 (green) and 10 (red) molar ratio of the ALDP peptide. The grey dashed line indicates the position of additional baseline correction applied to remove noise from DMF signals in the peptide stock solution. (c) Chemical shift perturbation of Met/Ile methyl groups seen in 1H,13C HSQC experiments upon increasing concentration of ALDP peptide. Black: free PEX19 CTD 100 μM, blue, green and red correspond to 200, 500 and 1,000 μM ALDP peptide concentration, respectively. (d) Quantification of chemical shift perturbation (CSP) of amide and methyl groups with respect to the PEX19 amino acid sequence. (e) Left: Surface representation of the PEX19 CTD coloured in red according to CSP. Right: cartoon representation with the backbone coloured based on amide CSP in red and spheres depicting methyl CSPs upon addition of the ALDP peptide (right). Grey colour refers to residues, which could not be analysed.

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