Figure 4: Relative gene expression of major carbon and energy metabolic pathways encoded by each MAG. | Nature Communications

Figure 4: Relative gene expression of major carbon and energy metabolic pathways encoded by each MAG.

From: Metabolic network analysis reveals microbial community interactions in anammox granules

Figure 4

Colour intensity represents gene expression, based on mapping of metatranscriptomic reads to the metagenomic assembly. Gene expression was relativized by median RPKM values calculated across each ORF in a given MAG (Methods section). A value of 1 equals median expression in a given genome. Yellow box indicates pathway absence. Anammox metabolic pathway in the AMX1 genome had a relative expression value of 15. See Supplementary Data 3 for a detailed summary of all reconstructed metabolic pathways.

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