Table 3 Gamete Competition results across TGFBM2 in French HHT.
SNP | Chr | Chr position | Gene | HHT1 and HHT2 families | HHT1 families | HHT2 families | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
P -value | N | AF | N | AF | P -value | N | AF | N | AF | P -value | N | AF | N | AF | ||||
rs1874804 | 1 | 212,572,219 | SMYD2 | 0.29 | C | 0.8 | T | 0.2 | 0.5 | C | 0.8 | T | 0.2 | 0.3 | C | 0.8 | T | 0.2 |
rs3002297 | 1 | 212,602,684 | PTPN14 | 0.46 | G | 0.8 | A | 0.2 | 0.68 | G | 0.8 | A | 0.2 | 0.15 | G | 0.7 | A | 0.3 |
rs3002300 | 1 | 212,605,233 | PTPN14 | 0.23 | T | 0.8 | A | 0.2 | 0.76 | T | 0.8 | A | 0.2 | 0.048 | T | 0.8 | A | 0.3 |
rs2936017 | 1 | 212,615,305 | PTPN14 | 0.27 | T | 0.8 | C | 0.2 | 0.89 | T | 0.8 | C | 0.3 | 0.047 | T | 0.7 | C | 0.3 |
rs2936018 | 1 | 212,627,975 | PTPN14 | 0.082 | C | 0.8 | T | 0.2 | 0.12 | C | 0.8 | T | 0.2 | 0.043 | C | 0.8 | T | 0.2 |
rs2070065 | 1 | 212,877,867 | CENPF | 0.97 | C | 0.9 | G | 0.1 | 0.8 | C | 0.9 | G | 0.1 | 0.42 | C | 0.9 | G | 0.1 |
rs7289 | 1 | 212,903,733 | CENPF | 0.93 | G | 0.5 | C | 0.5 | 0.47 | G | 0.5 | C | 0.5 | 0.49 | G | 0.6 | C | 0.4 |
rs10746458 | 1 | 214,034,701 | USH2A | 0.18 | G | 0.6 | A | 0.5 | 0.11 | G | 0.5 | A | 0.5 | 0.23 | G | 0.6 | A | 0.4 |
rs1538639 | 1 | 214,100,944 | USH2A | 0.81 | G | 0.9 | A | 0.1 | 0.69 | G | 0.9 | A | 0.1 | 0.59 | G | 0.9 | A | 0.1 |
rs2068721 | 1 | 214,319,365 | USH2A | 0.98 | A | 0.6 | C | 0.4 | 0.94 | A | 0.6 | C | 0.4 | 0.58 | A | 0.6 | C | 0.4 |
rs452747 | 1 | 214,412,771 | USH2A | 0.15 | C | 0.9 | T | 0.1 | 0.1 | C | 0.9 | T | 0.1 | 0.19 | C | 0.9 | T | 0.1 |
rs414373 | 1 | 214,416,358 | USH2A | 0.12 | T | 0.9 | C | 0.1 | 0.099 | T | 0.9 | C | 0.1 | 0.36 | T | 0.9 | C | 0.1 |
rs301746 | 1 | 214,423,261 | USH2A | 0.019 | C | 1 | T | 0.1 | 0.014 | C | 0.9 | T | 0.1 | 0.78 | C | 0.9 | T | 0.1 |
rs400358 | 1 | 214,434,804 | USH2A | 0.15 | C | 0.9 | T | 0.1 | 0.11 | C | 0.9 | T | 0.1 | 0.18 | C | 0.9 | T | 0.1 |
rs700024 | 1 | 214,509,837 | USH2A | 0.87 | G | 0.9 | C | 0.1 | 0.65 | G | 0.9 | C | 0.1 | 0.25 | G | 0.9 | C | 0.1 |
rs17650989 | 1 | 214,534,250 | USH2A | 0.94 | G | 0.9 | A | 0.1 | 0.47 | G | 0.9 | A | 0.1 | 0.38 | G | 0.9 | A | 0.1 |
rs17651066 | 1 | 214,536,744 | USH2A | 0.86 | A | 0.9 | C | 0.1 | 0.97 | A | 0.9 | C | 0.1 | 0.66 | A | 0.9 | C | 0.1 |
