Table 1 Sample and sequencing throughput for all 11 individuals.
From: The genomics of selection in dogs and the parallel evolution between dogs and humans
Individual | Sample | Location | Sequence depth (X) | SNP number | Diversity θ (4 Nμ) per kb | Indel number |
|---|---|---|---|---|---|---|
Wolves | ||||||
GW1 | Grey wolf | Altai, Russia | 11.24 | 5,564,300 | 1.52 | 811,429 |
GW2 | Grey wolf | Chukotka, Russia | 8.92 | 5,276,100 | 1.32 | 764,838 |
GW3 | Grey wolf | Bryansk, Russia | 11.10 | 5,472,254 | 1.44 | 902,521 |
GW4 | Grey wolf | Inner Mongolia, China | 9.61 | 5,420,479 | 1.37 | 906,620 |
Mean=5,433,283 | Mean=1.41 | Mean=846,352 | ||||
Chinese indigenous dogs | ||||||
DogCI1 | Chinese indigenous dog | Xi’an, China | 13.56 | 4,361,559 | 1.29 | 849,298 |
DogCI2 | Chinese indigenous dog | Simao, China | 9.83 | 3,571,772 | 0.81 | 570,177 |
DogCI3 | Chinese indigenous dog | Ya’an, China | 10.25 | 4,225,853 | 1.07 | 795,828 |
Mean=4,053,061 | Mean=1.06 | Mean=738,434 | ||||
Ancient breed | ||||||
DogTM | Tibetan Mastiff | Lijiang, China | 10.37 | 4,221,547 | 1.12 | 706,664 |
Modern breeds | ||||||
DogsGS | German Shepherd | Germany | 9.56 | 3,448,915 | 0.67 | 528,265 |
DogBM | Belgium Malinois | France | 10.11 | 3,664,565 | 0.93 | 687,172 |
DogREF | Boxer(reference) | na | 12.18 | 1,212,888 | 0.59 | — |
Mean=2,775,456 | Mean=0.73 | Mean=607,719 | ||||
