Table 1 Summary of over-represented gene ontology terms.

From: Genome of the red alga Porphyridium purpureum

GO identifier

GO term

Type

FDR

P -value

0000325

Plant-type vacuole

C

5.70 × 10−2

6.80 × 10−5

0009536

Plastid

C

5.90 × 10−2

9.90 × 10−5

0044434

Chloroplast part

C

5.90 × 10−2

1.10 × 10−4

0003006

Developmental process involved in reproduction

P

5.90 × 10−4

1.40 × 10−7

0022414

Reproductive process

P

1.80 × 10−2

8.30 × 10−6

0000003

Reproduction

P

2.60 × 10−2

2.00 × 10−5

0048608

Reproductive structure development

P

2.60 × 10−2

2.40 × 10−5

0051704

Multi-organism process

P

5.90 × 10−2

1.10 × 10−4

0009793

Embryo development ending in seed dormancy

P

5.90 × 10−2

1.20 × 10−4

0010154

Fruit development

P

7.00 × 10−2

1.80 × 10−4

0048316

Seed development

P

7.00 × 10−2

1.80 × 10−4

  1. C, cellular component; FDR, false discovery rate; GO, gene ontology; P, biological process.
  2. Over- represented GO terms in Plantae-associated genes in comparison to all genes in P. purpureum, with the associated type shown as well as the C and P, FDR and P-value from Fisher’s exact test.