Table 1 Summary of ETASs in the six elite varieties.
From: Analysis of elite variety tag SNPs reveals an important allele in upland rice
Total ETASs | Protein-altering ETASs a |
---|---|
Guichao2 2598 | Â |
 Intergenic region 2217 |  |
Promoter region 80 | Â |
 Gene region 381 |  |
UTR region 94 | Â |
CDS region 88 | 48 non-synonymous ETASs |
Intron region 199 | 3 ETASs disrupt splice donors/acceptors |
IR64 18695 | Â |
 Intergenic region 14884 |  |
Promoter region 583 | Â |
 Gene region 3811 |  |
UTR region 865 | Â |
CDS region 929 | 2 ETASs disrupt start codons 2 ETASs disrupt stop codons 17 ETASs produce premature stop codons 496 non-synonymous ETASs |
Intron region 2017 | 3 ETASs disrupt splice donors/acceptors |
Minghui63 11411 | Â |
 Intergenic region 9545 |  |
Promoter region 278 | Â |
 Gene region 1866 |  |
UTR region 437 | Â |
CDS region 408 | 2 ETASs disrupt start codons 5 ETASs produce premature stop codons 252 non-synonymous ETASs |
Intron region 1021 | 3 ETASs disrupt splice donors/acceptors |
IRAT104 24652 | Â |
 Intergenic region 20183 |  |
Promoter region 758 | Â |
 Gene region 4468 |  |
UTR region 1021 | Â |
CDS region 1230 | 3 ETASs disrupt start codons 2 ETASs disrupt stop codons 15 ETASs produce premature stop codons 753 non-synonymous ETASs |
Intron region 2217 | 5 ETASs disrupt splice donors/acceptors |
Koshihikari 914 | Â |
 Intergenic region 717 |  |
Promoter region 22 | Â |
 Gene region 197 |  |
UTR region 36 | Â |
CDS region 69 | 1 ETAS disrupts the start codon 21 non-synonymous ETASs |
Intron region 92 | Â |
Chujing27 2639 | Â |
 Intergenic region 2096 |  |
Promoter region 57 | Â |
 Gene region 543 |  |
UTR region 109 | Â |
CDS region 161 | 1 ETAS disrupts the start codon 1 ETAS causes a premature stop codon 82 non-synonymous ETASs |
Intron region 273 | 2 ETASs disrupt splice donors/acceptors |