Table 2 Eleven genes in the 350-kb selective sweep region around the Nced.
From: Analysis of elite variety tag SNPs reveals an important allele in upland rice
Gene ID in IRGSP/RAP build 5 | Functional annotation | Gene position | Position and effect of protein-altering ETASs | |
---|---|---|---|---|
Os12g0434400 | Similar to predicted protein aminopeptidase protein metabolic process | 14265768 | 14270781 | Â |
Os12g0434501 | Non-protein-coding transcript | 14273971 | 14275100 | Â |
Os12g0434601 | Hypothetical conserved gene | 14275188 | 14280955 | Â |
Os12g0434801 | Hypothetical genes | 14313390 | 14313689 | Â |
Os12g0435000 | Hypothetical conserved gene, zinc finger CCHC-type, nucleic acid binding, zinc ion binding | 14376106 | 14377443 | Nonsense mutation at 14376187 resulting in a 27-amino-acid truncation |
Os12g0435100 | Hypothetical protein | 14384557 | 14385840 | Â |
Os12g0435200 | 9-cis-epoxycarotenoid dioxygenase (Nced) | 14389427 | 14391376 | Non-synonymous mutation at 14390318 resulting in amino-acid substitution from valine to isoleucine |
Os12g0437800 | Similar to MPI, serine-type endopeptidase inhibitor activity response to wounding | 14567889 | 14568542 | Â |
Os12g0437932 | Hypothetical conserved gene | 14575640 | 14575890 | Â |
Os12g0438000 | Similar to histone H2A | 14580388 | 14581413 | Â |
Os12g0438100 | Hypothetical protein | 14589854 | 14590575 | Â |