Table 1 Features of the Pst-CY32 dikaryotic genome draft.
From: High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus
Estimated genome size | 110 Mb |
|---|---|
Total number of base pairs within assembled scaffolds | 130,657,047 |
N50 length in bp; total number >2 kb in length | 125,324; 3,596 |
N90 length in bp; total number >N90 length | 14,360; 1,560 |
Total number of assembled scaffolds | 4,283 |
Total number of base pairs within assembled contigs | 115,537,624 |
N50 length in base pairs; total number >2 kb in length | 18,007; 9,743 |
N90 length in base pairs; total number >N90 length | 4,099; 6,964 |
Total number of assembled contigs | 12,833 |
GC content of whole genome (%) | 44.77 |
Repetitive sequences (%) | 48.91 |
Proportion of genome that is coding (exonic; including introns) (%) | 33.59 |
Number of putative coding genes | 25,288 |
Gene size (mean base pairs; contain introns) | 1,735.43 |
Average number of exon per gene | 4.35 |
Average exon length (bp) | 297.83 |
Average intron length (bp) | 101.41 |
GC content in coding regions (%) | 47.65 |
Number of transfer RNAs | 864 |
