Table 2 Number and type of SNPs in five re-sequenced Pst isolates and Pst-130.
From: High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus
Sample Name | Total SNP | Homo | Hetero | Gene region | |||
|---|---|---|---|---|---|---|---|
Number | Rate (%) | Number | Rate (%) | CDS | |||
Non_Syn | Syn | ||||||
Pst-CY23 | 107,491 | 18,466 | 17.18 | 89,025 | 82.82 | 19,120 | 19,403 |
104E137A- | 102,786 | 16,138 | 15.70 | 86,648 | 84.30 | 18,494 | 18,687 |
PK-CDRD | 108,785 | 18,670 | 17.16 | 90,115 | 82.84 | 19,529 | 19,789 |
Pst-78 | 106,374 | 18,086 | 17.00 | 88,288 | 83.00 | 19,121 | 19,252 |
Hu09-2 | 104,300 | 16,913 | 16.22 | 87,387 | 83.78 | 18,890 | 18,991 |
Pst-130 | 81,001 | 14,434 | 17.82 | 66,567 | 82.18 | 15,131 | 13,827 |
