Table 1 RCR and S3H motifs of CHIV RC-Reps.
From: Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses
RCR motifs | S3H motifs | |||||
|---|---|---|---|---|---|---|
I | II | III | Walker-A | Walker-B | Walker-C | |
Reference viruses* | ||||||
Circoviridae and cycloviruses | [VC]FT[LIW]NN | [Px]HLQG | YC[Sx]K | G[Px][PST][GC]xGKS | [VI][IUML]DDF | UTS[NE] |
Nanoviridae | [VCx]FT[LI]N[FYN] | xHUQG | Y[CAS]xK | G[PS]xG[GN]EGK[TS] | [VIW][UAC][FIM]D[IVF] | V[FMI][AC]N |
Geminiviridae | FLTY[PS]x | [Px]H[Lx]H[VAC] | Y[UAC]xK | Gx[ST]R[TI]GK[TS] | [VI][IV]DD[VI] | UL[Cx]N |
CHIVs | ||||||
BSL RDHV | CITVNN | KHLQV | YCTK | GATGTGKS | IIDDY | ITCP |
CHIV1 | CFTLNN | RHLQG | YCSK | GPTGTGKT | IIDDY | ITAP |
CHIV2 | VLVLNN | IHLQG | YITK | GETGQGKS | IIDDY | ITTP |
CHIV3 | CITHNN | KHIQA | YCIK | GETGTGKS | IIDDV | FTAP |
CHIV4 | CITHNN | KHIQA | YCIK | GETGTGKS | IIDDV | FTAP |
CHIV5 | VFTLNN | PHIQG | YCSK | GDTGTGKS | VINDF | ITSS |
CHIV6 | CFTYYY | PHLQS | YCKK | PKGGNGKT | — | VFSN |
CHIV7 | DFRLNQ | IHFQG | YASK | VKGCQGKQ | IFLDL | VFTN |
CHIV8 | MFDWRH | DHYQG | YASK | PVGNNGKT | TLIDL | VFTN |
CHIV9 | LLTYKS | PHTHA | YLSK | SKGNAGKS | IIFDI | VMSN |
CHIV10 | CCVYDF | KHFQG | YTMK | EKGNIGKT | YLIDM | IFTN |
CHIV11 | SWTWNK | LHYQG | YCMK | DTGCTGKS | YIFDI | VFSN |
CHIV12 | CFTFNN | PHLQG | YCSK | EVGQLGKT | — | VLSN |
CHIV13 | HLTYKT | DHTHF | YHKK | GSTNTGKT | VFDDM | FTSN |
