Table 2 Molecular diversity of continental and island E. helvum populations.

From: Continent-wide panmixia of an African fruit bat facilitates transmission of potentially zoonotic viruses

  

Cytochrome b (mtDNA) diversity

Nuclear diversity

Pop

n

nh

Singleton (%)

Private (%)

h ±s.d.:

HR

π ,±s.d.:

θ S

S/d

A

R S

Private (%)

H O ±s.d.

Population-level

 Continental

GH

64

29

51.70%

58.60%

0.89±0.04

4.47

0.007±0.0008

7.4

12.52

9.56

3.95

0.70%

0.75±0.26

DR

21

11

45.50%

45.50%

0.87±0.06

4.04

0.006±0.0011

3.89

5.81

9.19

3.85

0.70%

0.75±0.26

KE

20

14

57.10%

57.10%

0.94±0.04

4.95

0.009±0.0015

5.92

5.98

9.19

3.93

0.00%

0.76±0.26

ZM

21

15

53.30%

53.30%

0.94±0.04

5.04

0.010±0.0017

6.11

5.56

8.81

3.89

0.00%

0.75±0.26

MA

18

11

9.10%

9.10%

0.92±0.05

4.59

0.009±0.0011

4.07

4.1

7.94

3.87

0.80%

0.75±0.27

TZ

34

23

43.50%

43.50%

0.96±0.02

5.29

0.011±0.0011

7.58

7.21

9.56

3.89

2.60%

0.75±0.25

UG

7

5

40.00%

40.00%

0.86±0.14

4

0.006±0.0018

3.27

3.23

5.56

4.01

0.00%

0.64±0.39

RM

10

6

33.30%

33.30%

0.84±0.10

3.73

0.007±0.0014

2.83

2.77

5.81

3.78

2.20%

0.67±0.33

 Island

BI

102

50

66.00%

70.00%

0.95±0.01

5.07

0.008±0.0005

9.24

15.83

12.44

3.87

4.50%

0.74±0.26

PR

70

4

25.00%

50.00%

0.24±0.07

0.77

0.004±0.0010

1.95

7.18

9.69

3.47

0.60%

0.68±0.27

ST

94

6

16.70%

16.70%

0.53±0.05

1.58

0.007±0.0007

2.08

3.61

9.81

3.45

0.00%

0.68±0.27

AN

83

3

0.00%

0.00%

0.20±0.06

0.61

0.003±0.0009

1.4

5.34

6.25

2.79

1.00%

0.55±0.31

Regional-level

ALL

544

114

75.40%

79.80%

0.87±0.01

NA

0.010±0.0002

13.38

23.19

NA

NA

NA

0.72±0.27

 Continental

CT

195

74

68.90%

79.70%

0.91±0.02

NA

0.008±0.0005

12.31

21.38

NA

NA

10.00%

0.75±0.26

CB

297

110

76.40%

95.50%

0.92±0.01

NA

0.008±0.0004

14.04

26.3

NA

NA

25.10%

0.75±0.26

 Island

iIS

247

9

22.20%

44.40%

0.56±0.02

NA

0.009±0.0002

2.14

3.71

NA

NA

2.20%

0.66±0.28

  1. Diversity statistics were inferred from 397 bp of cytochrome b mitochondrial DNA and 16 microsatellites. Population ID (Pop), number of sequences (n), number of Haplotypes (nh), singleton*, haplotypes (%), private*, haplotypes (%), haplotype diversity (h±s.d.), haplotype richness (HR), nucleotide diversity (π±s.d.), molecular diversity (θS), expansion coefficient (s.d.), Mean number of alleles per locus (A), allelic richness (RS), private alleles† (%), Observed heterozygosity (HO±s.d.).
  2. *Proportion of haplotypes present in a population or region that are singleton (only found in a single individual across all populations) or private (occurring in one or more individual but a single population or region).
  3. †Proportion of alleles present in a population or region that occur in a single population or region.
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