Table 1 Reaction and transition probabilities for the off-pathway reaction scheme.

From: Kinetic modelling indicates that fast-translating codons can coordinate cotranslational protein folding by avoiding misfolded intermediates

Elementary reaction probabilities

Transition probabilities

a=kA,i+1/(kA,i+1+kIU,i)

P(FiFi+1)=(k[1−cb])/(1−cbde)

b=kIU,i/(kA,i+1+kIU,i)

P(FiUi+1)=(eh)/(1−cbde)

c=kUI,i/(kA,i+1+kUI,i+kUF,i)

P(FiIi+1)=(eca)/(1−cbde)

d=kUF,i/(kA,i+1+kUF,i+kUI,i)

P(UiFi+1)=(dk)/(1−cbde)

e=kFU,i/(kA,i+1+kFU,i)

P(UiUi+1)=(h)/(1−cbde)

h=kA,i+1/(kA,i+1+kUF,i+kUI,i)

P(UiIi+1)=(ca)/(1−cbde)

k=kA,i+1/(kA,i+1+kFU,i)

P(IiFi+1)=(bdk)/(1−cbde)

N/A

P(IiUi+1)=(bh)/(1−cbde)

N/A

P(IiIi+1)=(a[1−de])/(1−cbde)

  1. N/A, not applicable.