Table 1 Predictors of homoplasy rates.

From: Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus

Predictor

−log10(P -value)

BiP allele frequency

5051

Distance from origin

245

Proximity to mobile elements

96

BiP type (synonymous, non-synonymous, and so on)

52

Local genetic diversity

33

Local GC content

26

COG category of nearby genes

10

BiP identity (A→C, A→G, etc.)

9

Local core density

6

  1. Significance (−log10 P-value) was calculated by systematically dropping each predictor group from the full negative binomial regression model.
Back to article page