Figure 1: NMR mapping the interaction with SUMO-2 chains on the RNF4–SIM region.
From: Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4

(a) Amino-acid sequence for the N-terminal fragment of RNF4 used in this study. The four SIMs as well as ‘SIM5’ are underlined; the residues affected by titration are coloured red, whereas those unaffected are coloured blue; residues coloured black are not classified owing to lack of assignment or overlap. A dashed line over the affected residue means its position was shifted with increasing SUMO concentrations; a thin line means the peak was initially shifted, then disappeared after ~1:1 SUMO added; a thick line indicates that the peak disappeared when <0.3 molar equivalents of SUMO was added. A schematic representation for RNF4 is shown below the sequence, where the SIMs are supposed to form β-strands upon binding to SUMO; a very positive region (with eight arginines) and a negative stretch (the two serine residues may be phosphorylated) are also highlighted in the scheme. (b) Overlay of 1H–15N HSQC NMR spectra for free RNF4 32–133 (red), RNF4 32–133 titrated with SUMO monomer (magenta), SUMO dimer (cyan), SUMO dimer with truncations (yellow) and polySUMO chain (blue); the titrations are represented by the mixtures at 1 M equivalent SUMO (in monomer concentration). Labels are placed close to the peaks in the free state. The full spectra are also available as Supplementary Fig. 2.