Table 1 sQTLs in Geuvadis populations.

From: Identification of genetic variants associated with alternative splicing using sQTLseekeR

 

CEU

FIN

GBR

TSI

YRI

Samples

91

95

94

93

89

Associations tested within the gene

 Tested SNPs

1,258,255

1,293,086

1,266,258

1,252,401

1,895,204

 Tested genes

9,997

10,029

10,006

10,043

9,983

 Associated SNPs

3,339

3,871

2,654

2,640

1,925

 Associated genes

155

184

175

185

168

Associations tested with a randomly selected gene

 Tested SNPs

1,158,299

1,195,389

1,131,122

1,117,988

1,754,599

 Tested genes

9,335

9,250

8,971

8,879

9,345

 Associated SNPs

25

47

28

25

72

 Associated genes

13

12

13

14

37

  1. FDR, false discovery rate; SNP, single nucleotide polymorphism.
  2. Number of tested and associated variants and genes at 5% FDR.
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