Table 3 psiQTLs in Geuvadis populations.

From: Identification of genetic variants associated with alternative splicing using sQTLseekeR

 

CEU

FIN

GBR

TSI

YRI

psiQTL analysis

 Tested SNPs

152,702

168,229

171,127

168,507

257,182

 Tested genes

4,227

4,476

4,594

4,549

4,482

 Associated SNPs

2,738

3,705

4,636

4,299

2,976

 Associated genes

282

382

475

425

381

Common in sQTL and psiQTL analysis

 Tested SNPs

143,169

156,889

159,914

156,871

206,721

 Tested genes

4,055

4,289

4,398

4,352

4,292

 Associated SNPs

92

221

186

159

106

 Associated genes

10

22

18

18

7

  1. FDR, false discovery rate; psiQTL, percent spliced in measure; SNP, single nucleotide polymorphism; sQTL, splicing QTLs.
  2. Number of tested and associated variants and genes at 1% FDR. Number of SNPs tested in common with sQTLseekeR.
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