Table 4 Enrichment in splicing-related features in sQTLs compared with psiQTLs in Geuvadis.
From: Identification of genetic variants associated with alternative splicing using sQTLseekeR
Feature | sQTLs | non-sQTL SNPs | sQTLs/non-sQTLs |
|---|---|---|---|
sQTLseekeR sQTLs | |||
% within exons | 37.83 | 11.97 | 3.2 |
% within splice sites | 1.20 | 0.24 | 5.0 |
Variation in splice site strength | 0.84 | 0.62 | 1.4 |
Consistent/inconsistent changes in splice site usage and strength | 10.50 | 1.54 | 6.8 |
% within 1 kb of a GWAS | 16.43 | 0.56 | 29.4 |
psiQTLs | |||
% within exons | 23.34 | 11.77 | 2.0 |
% within splice sites | 1.00 | 0.21 | 4.8 |
Variation in splice site strength | 1.58 | 0.55 | 2.9 |
Consistent/inconsistent changes in splice site usage and strength | 5.94 | 1.36 | 4.4 |
% within 1 kb of a GWAS | 1.50 | 0.68 | 2.2 |
