Table 1 A comparison of SNP-typing systems.
From: A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
SNP set and reference | Lineage classified (Number of sublineages classified) | No. of RD lineages covered | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | M. bovis | Total | ||
This study 62 SNPs | Yes (8*) | Yes (6*) | Yes (5*) | Yes (36*) | Yes (0) | Yes (0) | Yes (0) | Yes (0) | 7 (55) | 19† |
Homolka et al.17 71 SNPs | Yes (1‡) | Yes (0) | Yes (0) | Yes (7§) | Yes (2||) | Yes (0) | No (−) | Yes (0) | 6 (10) | NA |
Comas et al.16 93 SNPs | Yes (1‡) | Yes (2¶) | Yes (0) | Yes (5#) | Yes (0) | Yes (0) | No (−) | Yes (0) | 6 (7) | 9** |
Filliol et al.21 45 SNPs | No (−) | No (−) | No (−) | No (−) | No (−) | No (−) | No (−) | No (−) | 6 (−) | NA |
