Figure 2: Lifetimes of level 3 for N terminus-first translocation. | Nature Communications

Figure 2: Lifetimes of level 3 for N terminus-first translocation.

From: Protein co-translocational unfolding depends on the direction of pulling

Figure 2

(a) Event histogram of the dwell times in level 2 (step 2→3) for Trx V5-C109-oligo(dC)30 at +140 mV (ref. 11). The fit is to a single exponential function and yields a rate constant k2→3=70 s−1. (b) Event histogram of the dwell times in level 3 (step 3→4) for Trx V5-C109-oligo(dC)30 at +140 mV (ref. 11). The fit is to a single exponential function and yields a rate constant k3→4=1.7 s−1. (c) Free energy profile of the unfolding steps (2→3 and 3→4) for C terminus-first translocation at +140 mV. A pre-exponential factor of 10−8 s−1, and ΔG(N→U)=−90 kJ mol−1 and ΔG(N→I)=−55 kJ mol−1 were assumed, where: N, folded protein; U, unfolded protein; I, unfolding intermediate. (d) Event histogram of the dwell times in level 2 (step 2→3) for Trx oligo(dC)30-S1C-V5 at +140 mV. The fit is to a single exponential function and yields a rate constant k3→4=690 s−1. (e) Event histogram of the dwell times in level 3 (step 3→4) for Trx oligo(dC)30-S1C-V5 at +140 mV. The fit is to a double exponential function and yields rate constants k3a→4=0.47 s−1 and k3b→4=0.0087, s−1. The dashed line is the deconvolution into single exponentials. (f) Free energy profile of the unfolding steps (2→3 and 3→4) for N terminus-first translocation at +140 mV. A pre-exponential factor of 10−8 s−1, and ΔG(N→U)=−90 kJ mol−1, ΔG(N→Ia)=−45 kJ mol−1 and ΔG(N→Ib)=−50 kJ mol−1 were assumed, where: Ia and Ib are the two unfolding intermediates. Data for C terminus first are from ref. 11. Data were collected on six different pores in the case of C terminus first and on 17 different pores in the case of N terminus first.

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