Figure 1: Comparison of evolutionary features of croaker and other teleosts.
From: The draft genome of the large yellow croaker reveals well-developed innate immunity
(a) Phylogenetic tree and numbers of gene families under expansion (red)/contraction (green). Mya, million years ago. (b) Venn diagram showing unique and overlapping gene families in croaker, stickleback, torafugu and pufferfish. (c) Length of syntenic regions on each scaffold based on stickleback. Scaffolds are indicated by coverage ≥75% (red solid dots), 50%≤ coverage ≪75% (green solid dots) and coverage ≪50% (grey solid dots). Three blue dashed lines indicate coverage of 50, 75 and 100%, respectively, from bottom to top. (d) KEGG pathways to which rapidly evolving genes were mapped are indicated by pairs of median dN/dS ratios (black solid dots) in croaker and stickleback; significantly enriched (FDR≪0.05) rapidly evolving genes in KEGG pathways are highlighted for croaker (red solid dots), stickleback (green solid dots) or both (blue solid dots).
