Table 1 Mouse strains/models of IBD examined in this study.

From: Stereomicroscopic 3D-pattern profiling of murine and human intestinal inflammation reveals unique structural phenotypes

Strain

Breeding source

Reported digestive disease phenotype

Main reported and studied GI disease phenotypes

SM Cobblestones

Other SM lesions

A/J

Jackson

No*

 

No

Yes

AKR/J

Jackson, CWRU

No*

 

No

Yes

BALB/C

Jackson

No*

 

No

Yes

CBA/J

Jackson

No*

 

No

Yes

C3H/HEJ

Jackson

No*

 

No

Yes

C57BL6/J

Jackson

No*

 

No

Yes

C57BL6/NJ

CWRU

No*

 

No

Yes

C57BL6/NJredfoxp3

Jackson

No*

 

No

Yes

DBA/2J

Jackson

No*

 

No

Yes

SCID

CWRU

No*

 

No

Yes

FVB/NJ

Jackson

No*

 

No

Yes

FVB/129P2mdr1a−/−

Taconic

Yes, spontaneous

Colitis

No

Yes

C57BL/6JTNFΔARE/+

CWRU

Yes, spontaneous

Ileitis, arthritis

No

Yes

C57BL/6J.129STNFΔARE/+

CWRU

Yes, spontaneous

Ileitis, arthritis

No

Yes

SAMP1

CWRU

Yes, spontaneous

Ileitis,

Yes

Yes

SAMP1/YitFc

CWRU

Yes, spontaneous

Ileitis

Yes

Yes

SAMP1/YitFc NOD2−/−

CWRU

Yes, spontaneous

Ileitis

Yes

Yes

SAMP1/YitFc—Germ-free

CWRU/Taconic

Yes, spontaneous

Ileitis

Yes

Yes

Consomic SAMP with single replacement of C57BL6/J-derived of chromosomes X, 6, 8, and 9

CWRU

Yes, spontaneous

Ileitis

Yes

Yes

SAMP6

Harlan, CWRU

Yes, spontaneous

Colitis

No

Yes

DSS-induced

CWRU

Inducible

Colitis

Yes

AOM/DSS induced

CWRU

Inducible

Colitis

Yes

RBhigh into SCID induced

CWRU

Inducible

Colitis

Yes

  1. *Strains in the top third of the list were selected from strains for which the genome has been sequenced and that are phenotypically well characterized (www.sanger.ac.uk/resources/mouse/genomes/). Strains that are not referenced in the manuscript are part of ongoing genetic projects in our laboratory.