Table 2 TRANSFAC analysis of predicted allele-specific transcription factor binding at rs2857532.

From: Cis-eQTL analysis and functional validation of candidate susceptibility genes for high-grade serous ovarian cancer

Matrix

Factor name

Strand

Core score

Matrix score

Sequence

V$HOMEZ_01

Homez

(−)

0.888

0.674

aacaggAGCGAaattcc

V$BEN_01

BEN

(+)

0.877

0.878

GAGCGaaa

V$RELA_Q6

RelA-p65

(−)

1

0.928

agcgaaATTCCa

  1. Analyses were performed using the Match tool. Only transcription factors (TFs) predicted to uniquely bind to the risk (G) allele are shown. The position of the polymorphism within the TF-binding sequence is shown in bold font.
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