Table 1 List of the twelve cancer types analysed.

From: Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

Data

Mutation

RNASeq

SNP6.0

Overlap

BLCA

99

96

125

94

BRCA

772

822

879

743

COAD

155

192

414

149

GBM

291

167

576

144

HNSC

306

303

306

295

KIRC

417

428

452

390

LAML

196

173

197

167

LUAD

230

355

358

169

LUSC

178

220

342

177

OV

316

266

581

159

READ

69

71

163

65

UCEC

248

333

493

235

  1. BLCA, bladder urothelial carcinoma; BRCA, breast invasive carcinoma; COAD, colon adenocarcinoma; GBM, glioblastoma multiforme; HNSC, head and neck squamous cell carcinoma; KIRC, kidney renal clear cell carcinoma; LAML, acute myeloid leukaemia, also denoted as AML; LUAD, lung adenocarcinoma; LUSC, lung squamous cell carcinoma; OV, ovarian serous cystadenocarcinoma; READ, rectum adenocarcinoma; UCEC, uterine corpus endometrioid carcinoma.
  2. The numbers are the sample counts. Totally, 563,024 somatic mutations in the overlapped samples (363,676 missense mutations, 132,981 synonymous mutations, 33,838 nonsense mutations, 13,260 frameshift indels, 6,952 non-coding RNA mutations, 8,699 splice site mutations, 3,141 in-frame indels and 477 stop gain mutations). In trans-analysis, we added the 37,308 homozygous deletions in 2,084 genes (focal copy number deletion peaks), and 69,643 amplifications in 960 genes (focal copy number amplification peaks).
Back to article page