Table 1 Association results of susceptibility loci associated with the atopic march.

From: Meta-analysis identifies seven susceptibility loci involved in the atopic march

SNP ID*

Chr

Position

EA

AA

Set

AF

OR

95% CI

P value

Genes

rs12081541§ (i)

1

150707990

c

t

D

0.091

1.61

1.41–1.89

8.5 × 10−11

CRNN/LCE5A (FLG)

rs17690965 (i)

5

132058566

c

g

D

0.259

1.28

1.16–1.42

1.5 × 10−6

IL4/KIF3A

     

R1

0.271

1.18

1.05–1.32

4.8 × 10−3

 
     

Combined

0.264

1.24

1.15–1.33

4.5 × 10−8

 

rs9357733 (i)

6

52400095

a

g

D

0.815

1.29

1.13–1.46

9.5 × 10−5

EFHC1

     

R1

0.807

1.27

1.11–1.45

5.1 × 10−4

 
     

R2

0.792

1.22

1.01–1.47

0.038

 
     

Combined

0.808

1.27

1.17–1.38

2.1 × 10−8

 

rs479844 (g)

11

65308533

g

a

D

0.558

1.28

1.16–1.41

3.6 × 10−7

AP5B1/OVOL1

     

R1

0.563

1.22

1.25–1.54

2.0 × 10−4

 
     

Combined

0.560

1.25

1.24–1.43

3.6 × 10−10

 

rs2155219 (i)

11

75976842

t

g

D

0.481

1.28

1.17–1.41

1.5 × 10−7

C11orf30/LRRC32

     

R1

0.494

1.39

1.25–1.54

1.2 × 10−9

 
     

Combined

0.487

1.33

1.24–1.43

1.8 × 10−15

 

rs993226 (g)

12

83410704

g

t

D

0.037

1.58

1.27–1.96

4.2 × 10−5

SLC6A15/TMTC2

     

R1

0.033

1.59

1.23–2.04

4.0 × 10−4

 
     

R2

0.027

1.57

1.05–2.35

0.028

 
     

Combined

0.034

1.58

1.35–1.84

5.3 × 10−9

 

rs10445308 (i)

17

35191573

c

t

D

0.530

1.25

1.14–1.37

2.9 × 10−6

IKZF3

     

R1

0.528

1.18

1.05–1.30

2.9 × 10−3

 
     

Combined

0.529

1.22

1.14–1.30

4.7 × 10−8

 
  1. AA, alternative allele; AF, effect allele frequency; EA, effect allele; CI, confidence interval; OR, odds ratio.
  2. *(i), imputed SNP; (g), genotyped SNP.
  3. Genomic positions were based on human genome reference NCBI Build 36.3.
  4. D, discovery set; R1, replication set 1; R2, replication set 2; combined, combined analysis of D and R1 and of D, R1 and R2 (rs9357733 and rs993226 only), respectively.
  5. §rs12081541 represents the known FLG risk locus and was not subjected to replication.