Supplementary Figure 8: Comparison of two recombination-detecting methods.
From: Dense genomic sampling identifies highways of pneumococcal recombination
(a) Genome view of recombination fragments predicted by both algorithms. Recombination regions are aligned with taxa on the phylogenetic tree (left). Genome coordinates are labeled on top. Recombination regions exclusively predicted by methods described in Croucher et al. and Marttinen et al. are highlighted in red and blue, respectively. Overlapping regions predicted by both algorthms are highlighted in dark grey. (b) A histogram showing the length of recombination fragments (bp) predicted by two algorithms. (c) Sequence quality of recombination fragments predicted by two algorithms reported as percent “N”. For (b) and (c), fragments predicted by tools described in Croucher et al. and Marttinen et al. are shaded in red and blue, respectively. The values given by (b) and (c) are summarized in (d).
