Supplementary Figure 3: Structural variant validation in DIPG29. | Nature Genetics

Supplementary Figure 3: Structural variant validation in DIPG29.

From: Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations

Supplementary Figure 3

(a) Structural variant spanning six breakpoints as predicted by discordant read-pair mappings in DIPG29. (b) PCR validation of DDX1-KIDINS220 (left primer, TCTATGCCAGTGCTTTACTCCTT; right primer, CTGTTCCACCAAAGCCAAAT) and DDX1-MYCN (left primer, TGAGCAGATTTTCTGTATATTTTCCA; right primer, GTCTCCCAGGCTGCAGTG) in tumour and matched normal show product band only in tumor DNA. (c) Sanger sequencing through breakpoints in DDX1-KIDINS220 and DDX1-MYCN structural variants.

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