Supplementary Figure 8: Examples of topological incongruence in recombinant genes.
From: Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates
Gene trees were compared topologically to the concatenate of the whole-core alignment. Sequences from other STs were included to account for recombination with external strains and are shown in different colors. (a) The topology of the concatenate. (b–f) The topologies of five different genes detected as recombinant. Note the external STs interspersed within the ST578 population.
